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SRX7431048: GSM4230659: N2 OP50; Caenorhabditis elegans; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 12.7M spots, 2.3G bases, 1.5Gb downloads

Submitted by: NCBI (GEO)
Study: CDK1-formin signal confers microvillar effacement by an attaching and effacing (A/E) pathogen
show Abstracthide Abstract
Enterohemorrhagic Escherichia coli (EHEC) induces the attachment and effacement of intestinal microvilli. While the molecular mechanisms contributed to the attachment of EHEC have been thoroughly studied, the underlying mechanisms for the effacement of intestinal microvilli induced by EHEC remained elusive. By focus RNAi screening and genetic analysis in C. elegans and further reconfirmed in human Caco-2 intestinal epithelial cells, we demonstrate that the CDK1-formin signal axis is required for this EHEC-induced microvillar effacement in vitro and in vivo. Overall design: The mRNA profiles of N2 wild type C. elegans of during pathogen EDL933 and non-pathogen OP50 6 hours treatment were generated by deep sequencing, using Illumina HiSeq 2000.
Sample: N2 OP50
SAMN13670854 • SRS5876942 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: All worms were collected, flash frozen on dry ice, and RNA was harvested using Trizol reagent. Illumina TruSeq RNA Sample Prep Kit (Cat#FC-122-1001) was used with 1 ug of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM4230659
Links:
Runs: 1 run, 12.7M spots, 2.3G bases, 1.5Gb
Run# of Spots# of BasesSizePublished
SRR1075653712,706,8022.3G1.5Gb2020-11-11

ID:
9722916

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